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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
DNase-seq
2
ATAC-seq
1
FAIRE-seq
1
Hi-C
1
MPRA
Assay category
201
DNA binding
89
Transcription
15
DNA methylation
8
DNA accessibility
1
3D chromatin structure
Target of assay
185
histone modification
184
histone
broad histone mark
80
narrow histone mark
75
transcription factor
42
control
10
RNA binding protein
5
chromatin remodeller
Date released
683
February, 2021
350
November, 2017
341
May, 2020
305
August, 2021
297
May, 2021
279
August, 2017
236
October, 2019
190
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
95
July, 2019
88
November, 2018
67
December, 2017
59
May, 2019
58
March, 2020
55
October, 2018
47
September, 2023
45
November, 2019
43
April, 2019
40
September, 2020
35
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
May, 2024
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
13
October, 2017
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
5
September, 2018
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
250
fastq
244
bam
230
bigWig
105
bed narrowPeak
89
tsv
51
bigBed narrowPeak
40
tagAlign
27
bed bed3+
19
bed broadPeak
9
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
1
txt
Organism
311
Homo sapiens
Biosample type
218
tissue
48
in vitro differentiated cells
29
cell line
20
primary cell
Organ
159
pancreas
85
connective tissue
37
adipose tissue
36
liver
27
blood
27
bodily fluid
epithelium
14
musculature of body
7
spleen
Project
315
AMP
Genome assembly (visualization)
234
hg19
219
GRCh38
Lab
315
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
34
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
organ_slims!
epithelium
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
315 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
ATAC-seq
FAIRE-seq
Hi-C
MPRA
tissue
islet of Langerhans
28
89
1
1
liver
29
3
1
subcutaneous abdominal adipose tissue
16
3
skeletal muscle tissue
10
4
white adipose tissue
12
+ See 5 more…
in vitro differentiated cells
adipocyte
47
1
cell line
GM12878
27
HepG2
1
MIN6
1
primary cell
skeletal muscle myoblast
9
1
2
pancreatic endocrine cell
8
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