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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
222
ChIP-seq
89
total RNA-seq
6
WGBS
5
RRBS
4
DNase-seq
3
single cell RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
RNA microarray
Assay category
222
DNA binding
92
Transcription
11
DNA methylation
6
DNA accessibility
Target of assay
152
histone
152
histone modification
84
broad histone mark
67
narrow histone mark
43
transcription factor
27
control
8
RNA binding protein
3
chromatin remodeller
Date released
680
February, 2021
373
May, 2021
328
August, 2017
282
August, 2021
273
October, 2019
197
June, 2019
153
February, 2023
147
May, 2020
135
July, 2018
115
May, 2019
87
July, 2019
85
November, 2017
80
April, 2019
80
May, 2022
74
October, 2018
55
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
November, 2018
34
December, 2018
27
December, 2017
25
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
237
bigWig
230
fastq
227
bam
107
bed narrowPeak
92
tsv
65
tagAlign
41
bed broadPeak
33
bigBed narrowPeak
30
bed bed3+
15
bigBed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
Organism
325
Homo sapiens
Biosample type
232
tissue
70
in vitro differentiated cells
30
primary cell
Organ
188
pancreas
125
connective tissue
liver
57
adipose tissue
epithelium
26
musculature of body
3
kidney
Project
332
AMP
Genome assembly (visualization)
239
hg19
213
GRCh38
Lab
332
AMP-T2D consortium
Audit category:
3
audit script error
2
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
epithelium
liver
BIOSAMPLE
ASSAY
332 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
single cell RNA-seq
ATAC-seq
FAIRE-seq
RNA microarray
tissue
islet of Langerhans
42
89
1
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
white adipose tissue
12
+ See 4 more…
in vitro differentiated cells
adipocyte
67
1
cardiomyocytes (cardiac muscle cell)
2
primary cell
skeletal muscle myoblast
15
1
2
pancreatic endocrine cell
12
See all biosamples
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