Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
total RNA-seq
94
ChIP-seq
6
WGBS
3
ATAC-seq
1
DNase-seq
1
FAIRE-seq
Assay category
115
Transcription
94
DNA binding
6
DNA methylation
5
DNA accessibility
Target of assay
66
histone
66
histone modification
34
narrow histone mark
32
broad histone mark
21
control
7
transcription factor
2
RNA binding protein
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
194
bam
185
bigWig
174
fastq
121
tsv
49
bed narrowPeak
19
bed bed3+
17
bigBed narrowPeak
16
tagAlign
12
bed broadPeak
Organism
213
Homo sapiens
Biosample type
147
tissue
47
primary cell
26
cell line
Organ
580
connective tissue
443
adipose tissue
220
pancreas
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
61
epithelium
57
liver
26
musculature of body
8
kidney
8
skeleton
6
limb
Project
214
AMP
6
HPAP
Genome assembly (visualization)
185
hg19
178
GRCh38
Lab
214
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
26
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
month_released!
April, 2018
BIOSAMPLE
ASSAY
220 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
WGBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
89
42
1
1
pancreas
14
primary cell
pancreatic alpha cell
13
6
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
cell line
EndoC_BH1
26
Download