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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
94
ChIP-seq
19
ATAC-seq
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
FAIRE-seq
Assay category
131
Transcription
94
DNA binding
23
DNA accessibility
Target of assay
66
histone
66
histone modification
34
narrow histone mark
32
broad histone mark
21
control
7
transcription factor
2
RNA binding protein
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
210
fastq
172
bam
164
bigWig
89
tsv
53
bed narrowPeak
19
bed bed3+
17
bigBed narrowPeak
16
tagAlign
13
bed broadPeak
Organism
241
Homo sapiens
Biosample type
170
tissue
78
primary cell
1
cell line
Organ
249
pancreas
140
connective tissue
81
epithelium
59
adipose tissue
54
liver
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
26
musculature of body
17
brain
8
bone element
8
skeleton
1
spleen
Project
194
AMP
37
HPAP
18
T1D
Genome assembly (visualization)
164
hg19
157
GRCh38
Lab
193
AMP-T2D consortium
37
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
22
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
249 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
94
42
12
2
1
1
pancreas
14
body of pancreas
4
primary cell
pancreatic alpha cell
27
13
1
pancreatic beta cell
10
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
cell line
EndoC_BH1
1
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