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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
138
ChIP-seq
6
WGBS
2
single cell RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
138
DNA binding
6
DNA methylation
2
DNA accessibility
2
Transcription
Target of assay
82
histone
82
histone modification
47
broad histone mark
36
transcription factor
34
narrow histone mark
20
control
6
RNA binding protein
2
chromatin remodeller
Date released
521
February, 2021
125
August, 2017
97
August, 2021
57
April, 2019
50
February, 2023
45
June, 2019
40
July, 2019
40
May, 2024
23
October, 2018
21
May, 2019
12
October, 2019
9
March, 2020
6
November, 2020
5
February, 2020
4
May, 2021
2
April, 2018
2
July, 2018
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
94
bam
82
bigWig
74
fastq
61
bed narrowPeak
22
tagAlign
18
bigBed narrowPeak
11
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
tsv
1
bigBed broadPeak
Organism
148
Homo sapiens
Biosample type
78
tissue
68
in vitro differentiated cells
2
primary cell
Organ
347
pancreas
127
connective tissue
67
epithelium
57
adipose tissue
54
liver
50
blood vessel
50
vasculature
33
musculature of body
28
brain
21
heart
7
limb
5
artery
5
kidney
Project
148
AMP
Genome assembly (visualization)
82
GRCh38
81
hg19
Lab
148
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
BIOSAMPLE
ASSAY
148 results
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Clear Filters
ChIP-seq
WGBS
single cell RNA-seq
ATAC-seq
DNase-seq
tissue
subcutaneous abdominal adipose tissue
36
3
white adipose tissue
12
right atrium auricular region
10
right cardiac atrium
6
adipose tissue
2
3
+ See 2 more…
in vitro differentiated cells
adipocyte
67
1
primary cell
pancreatic stellate cell
2
See all biosamples
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