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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
ChIP-seq
9
WGBS
6
RRBS
4
DNase-seq
2
ATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
173
DNA binding
15
DNA methylation
6
DNA accessibility
4
Transcription
1
3D chromatin structure
Target of assay
133
histone modification
132
histone
77
broad histone mark
54
narrow histone mark
40
transcription factor
control
6
RNA binding protein
3
chromatin remodeller
Date released
680
February, 2021
335
November, 2017
330
May, 2021
318
May, 2020
303
August, 2021
263
October, 2019
206
June, 2019
194
August, 2017
149
February, 2023
99
July, 2019
96
May, 2019
96
May, 2022
75
November, 2018
73
December, 2017
66
April, 2019
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
31
December, 2018
31
February, 2018
26
January, 2019
24
February, 2020
19
April, 2020
15
May, 2023
15
October, 2017
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
5
October, 2018
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
112
bigWig
103
fastq
98
bam
93
bed narrowPeak
60
tagAlign
29
bed broadPeak
25
bigBed narrowPeak
15
bigBed broadPeak
12
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
1
hic
Organism
195
Homo sapiens
Biosample type
117
tissue
60
in vitro differentiated cells
18
primary cell
2
cell line
2
stem cell
Organ
pancreas
111
connective tissue
51
adipose tissue
43
liver
23
musculature of body
17
epithelium
Project
194
AMP
4
community
1
ITG
Genome assembly (visualization)
114
hg19
96
GRCh38
Lab
194
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
17
missing controlled_by
Audit category:
8
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
pancreas
target.investigated_as!
control
BIOSAMPLE
ASSAY
199 results
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Clear Filters
ChIP-seq
WGBS
RRBS
DNase-seq
ATAC-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
liver
37
3
1
subcutaneous abdominal adipose tissue
31
3
skeletal muscle tissue
19
4
white adipose tissue
12
adipose tissue
1
3
+ See 2 more…
in vitro differentiated cells
adipocyte
59
1
primary cell
skeletal muscle myoblast
14
1
2
chondrocytes
1
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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