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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
total RNA-seq
98
ChIP-seq
3
WGBS
1
ATAC-seq
1
DNase-seq
1
RRBS
1
pCHi-C
Assay category
143
Transcription
98
DNA binding
4
DNA methylation
2
DNA accessibility
Target of assay
60
histone modification
59
histone
40
narrow histone mark
34
control
19
broad histone mark
4
transcription factor
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
219
bam
188
bigWig
144
tsv
70
tagAlign
45
bed narrowPeak
28
fastq
6
bigBed narrowPeak
3
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
Organism
248
Homo sapiens
Biosample type
247
tissue
1
cell line
Organ
248
liver
188
pancreas
125
connective tissue
57
adipose tissue
29
epithelium
26
musculature of body
Project
248
AMP
Genome assembly (visualization)
190
hg19
181
GRCh38
Lab
248
AMP-T2D consortium
Audit category:
1
inconsistent control read length
month_released!
November, 2018
November, 2019
BIOSAMPLE
ASSAY
248 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
DNase-seq
RRBS
pCHi-C
tissue
liver
143
98
3
1
right lobe of liver
1
1
cell line
HepG2
1
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