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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ChIP-seq
6
WGBS
4
RRBS
1
ATAC-seq
1
DNase-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
139
DNA binding
10
DNA methylation
3
DNA accessibility
1
Transcription
Target of assay
88
histone
88
histone modification
52
broad histone mark
35
narrow histone mark
34
transcription factor
17
control
4
RNA binding protein
2
chromatin remodeller
Date released
455
February, 2021
151
August, 2017
61
June, 2019
28
July, 2019
23
October, 2018
14
February, 2023
7
March, 2020
7
May, 2019
6
November, 2020
5
August, 2021
4
February, 2020
4
October, 2019
2
April, 2018
2
January, 2018
2
July, 2018
2
May, 2021
2
May, 2022
1
August, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
78
bigWig
74
fastq
71
bam
59
bed narrowPeak
37
tagAlign
15
bed broadPeak
12
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
bigBed narrowPeak
1
bigBed broadPeak
1
txt
Organism
153
Homo sapiens
Biosample type
85
tissue
68
in vitro differentiated cells
Organ
292
pancreas
125
connective tissue
109
epithelium
94
liver
57
adipose tissue
28
musculature of body
Project
153
AMP
Genome assembly (visualization)
80
hg19
65
GRCh38
Lab
153
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
month_released!
April, 2020
BIOSAMPLE
ASSAY
153 results
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Clear Filters
ChIP-seq
WGBS
RRBS
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
tissue
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
1
1
white adipose tissue
12
adipose tissue
2
3
subcutaneous adipose tissue
1
in vitro differentiated cells
adipocyte
67
1
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