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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
3
ATAC-seq
3
Hi-C
Assay category
32
DNA binding
3
3D chromatin structure
3
DNA accessibility
Target of assay
16
histone
16
histone modification
14
control
10
narrow histone mark
6
broad histone mark
2
RNA binding protein
2
transcription factor
Date released
80
May, 2022
61
September, 2018
52
February, 2023
35
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
August, 2017
26
May, 2021
20
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
35
bam
35
fastq
23
bigWig
21
bed narrowPeak
7
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
3
bedpe bed3+
3
cool
3
hic
Organism
38
Homo sapiens
Biosample type
38
primary cell
Organ
369
liver
191
pancreas
125
connective tissue
91
brain
57
adipose tissue
38
epithelium
26
musculature of body
6
vasculature
3
blood vessel
Project
35
AMP
3
HPAP
Genome assembly (visualization)
26
hg19
21
GRCh38
Lab
35
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
Audit category:
4
inconsistent control read length
BIOSAMPLE
ASSAY
38 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
primary cell
pancreatic alpha cell
13
1
1
pancreatic beta cell
13
1
1
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
pancreatic acinar cell
1
1
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