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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
546
ChIP-seq
89
total RNA-seq
6
RRBS
4
DNase-seq
3
WGBS
1
ATAC-seq
1
FAIRE-seq
Assay category
546
DNA binding
89
Transcription
9
DNA methylation
6
DNA accessibility
Target of assay
255
transcription factor
196
histone modification
195
histone
109
broad histone mark
92
control
86
narrow histone mark
66
recombinant protein
39
RNA binding protein
16
chromatin remodeller
2
other context
2
other post-translational modification
Date released
400
November, 2017
371
May, 2021
341
May, 2020
308
August, 2021
275
October, 2019
250
August, 2017
228
February, 2021
180
June, 2019
139
February, 2023
133
July, 2018
120
May, 2022
115
May, 2019
87
November, 2018
80
April, 2019
77
July, 2019
75
December, 2017
56
March, 2020
51
October, 2018
47
September, 2023
44
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
18
April, 2020
16
January, 2021
14
April, 2018
14
May, 2023
12
September, 2018
7
January, 2018
6
September, 2017
5
March, 2019
4
December, 2019
4
November, 2020
2
June, 2018
1
August, 2022
1
March, 2023
Available data
561
bam
512
bigWig
497
fastq
382
bed narrowPeak
338
bigBed narrowPeak
134
tagAlign
99
bed broadPeak
89
tsv
74
bigBed broadPeak
22
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
Organism
650
Homo sapiens
Biosample type
315
cell line
302
tissue
33
primary cell
Organ
369
liver
181
pancreas
connective tissue
91
brain
57
adipose tissue
epithelium
26
musculature of body
6
vasculature
3
blood vessel
Project
650
AMP
Genome assembly (visualization)
464
hg19
437
GRCh38
Lab
650
AMP-T2D consortium
Audit category:
32
missing controlled_by
Audit category:
27
inconsistent control read length
5
inconsistent control run_type
2
inconsistent assembly
organ_slims!
connective tissue
epithelium
BIOSAMPLE
ASSAY
650 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
DNase-seq
WGBS
ATAC-seq
FAIRE-seq
cell line
HepG2
315
tissue
islet of Langerhans
42
89
1
1
liver
48
1
3
skeletal muscle tissue
22
4
layer of hippocampus
22
caudate nucleus
15
+ See 6 more…
primary cell
skeletal muscle myoblast
15
1
2
pancreatic endocrine cell
12
astrocyte of the cerebellum
3
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