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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
272
ChIP-seq
12
WGBS
11
DNase-seq
6
RRBS
2
ATAC-seq
1
single cell RNA-seq
Assay category
272
DNA binding
18
DNA methylation
13
DNA accessibility
1
Transcription
Target of assay
133
histone modification
132
histone
104
transcription factor
77
broad histone mark
54
narrow histone mark
35
control
27
RNA binding protein
16
recombinant protein
10
chromatin remodeller
3
other context
3
other post-translational modification
Date released
683
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
223
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
200
fastq
194
bam
186
bigWig
163
bed narrowPeak
95
bigBed narrowPeak
69
tagAlign
36
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
1
csv
Organism
304
Homo sapiens
Biosample type
156
tissue
68
in vitro differentiated cells
61
cell line
19
primary cell
Organ
pancreas
126
connective tissue
107
liver
58
adipose tissue
29
epithelium
26
musculature of body
15
blood
15
bodily fluid
9
spleen
2
brain
Project
304
AMP
Genome assembly (visualization)
185
hg19
170
GRCh38
Lab
304
AMP-T2D consortium
Audit category:
20
missing controlled_by
Audit category:
13
inconsistent control read length
5
inconsistent control run_type
2
inconsistent assembly
month_released!
May, 2023
organ_slims!
pancreas
BIOSAMPLE
ASSAY
304 results
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Clear Filters
ChIP-seq
WGBS
DNase-seq
RRBS
ATAC-seq
single cell RNA-seq
tissue
liver
52
3
2
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
white adipose tissue
12
spleen
6
2
1
+ See 5 more…
in vitro differentiated cells
adipocyte
67
1
cell line
HepG2
45
1
GM12878
15
primary cell
skeletal muscle myoblast
15
2
1
pancreatic cell
1
See all biosamples
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