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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
ChIP-seq
12
WGBS
11
DNase-seq
6
RRBS
2
ATAC-seq
1
single cell RNA-seq
Assay category
140
DNA binding
18
DNA methylation
13
DNA accessibility
1
Transcription
Target of assay
133
histone modification
histone
104
transcription factor
77
broad histone mark
54
narrow histone mark
35
control
27
RNA binding protein
16
recombinant protein
10
chromatin remodeller
3
other context
3
other post-translational modification
Date released
683
February, 2021
318
November, 2017
314
May, 2020
295
August, 2021
200
May, 2021
195
June, 2019
149
February, 2023
107
October, 2019
102
July, 2019
96
May, 2022
91
August, 2017
81
November, 2018
63
December, 2017
50
March, 2020
47
September, 2023
40
September, 2020
35
December, 2018
27
May, 2019
24
February, 2020
23
February, 2018
23
January, 2019
23
October, 2018
20
April, 2019
19
April, 2020
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
6
October, 2017
5
March, 2023
5
May, 2024
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
150
fastq
144
bam
122
bigWig
99
bed narrowPeak
77
bigBed narrowPeak
21
bed bed3+
11
bed broadPeak
11
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
9
tagAlign
1
csv
Organism
172
Homo sapiens
Biosample type
73
tissue
61
cell line
31
in vitro differentiated cells
7
primary cell
Organ
pancreas
75
liver
57
connective tissue
26
adipose tissue
15
blood
15
bodily fluid
15
epithelium
9
spleen
7
musculature of body
2
brain
Project
172
AMP
Genome assembly (visualization)
121
hg19
120
GRCh38
Lab
172
AMP-T2D consortium
Audit category:
20
missing controlled_by
Audit category:
11
inconsistent control read length
4
inconsistent control run_type
organ_slims!
pancreas
target.investigated_as!
histone
BIOSAMPLE
ASSAY
172 results
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Clear Filters
ChIP-seq
WGBS
DNase-seq
RRBS
ATAC-seq
single cell RNA-seq
tissue
liver
20
3
2
1
white adipose tissue
12
spleen
6
2
1
subcutaneous abdominal adipose tissue
5
3
skeletal muscle tissue
3
4
+ See 5 more…
cell line
HepG2
45
1
GM12878
15
in vitro differentiated cells
adipocyte
30
1
primary cell
skeletal muscle myoblast
3
2
1
pancreatic cell
1
See all biosamples
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