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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
6
WGBS
4
DNase-seq
3
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
90
DNA binding
8
DNA accessibility
6
DNA methylation
1
3D chromatin structure
Target of assay
65
histone
65
histone modification
43
broad histone mark
22
narrow histone mark
13
control
12
transcription factor
Date released
452
February, 2021
57
August, 2017
50
May, 2019
48
October, 2019
36
February, 2023
24
July, 2019
23
October, 2018
8
June, 2019
7
August, 2021
6
November, 2017
5
February, 2020
5
March, 2020
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
63
bam
54
bigWig
37
bed narrowPeak
36
bigBed narrowPeak
18
fastq
8
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
hic
1
tar
Organism
105
Homo sapiens
Biosample type
84
tissue
21
primary cell
Organ
206
pancreas
129
connective tissue
86
brain
69
limb
64
epithelium
61
liver
58
adipose tissue
47
blood vessel
47
vasculature
42
nerve
30
kidney
26
artery
26
musculature of body
21
eye
21
vein
8
heart
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
skin of body
Project
105
AMP
Genome assembly (visualization)
53
hg19
49
GRCh38
Lab
105
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
105 results
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Clear Filters
ChIP-seq
WGBS
DNase-seq
ATAC-seq
FAIRE-seq
Hi-C
tissue
subcutaneous abdominal adipose tissue
36
3
tibial artery
23
2
1
white adipose tissue
12
adipose tissue
2
3
1
subcutaneous adipose tissue
1
primary cell
endothelial cell of umbilical vein
17
2
1
1
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