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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
80
ChIP-seq
40
single cell RNA-seq
7
ATAC-seq
6
RRBS
5
DNase-seq
3
WGBS
1
FAIRE-seq
Assay category
145
Transcription
80
DNA binding
13
DNA accessibility
9
DNA methylation
Target of assay
167
histone modification
histone
89
broad histone mark
76
narrow histone mark
44
control
35
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
329
February, 2021
318
November, 2017
314
May, 2020
298
August, 2021
259
May, 2021
204
February, 2023
200
May, 2022
188
August, 2017
180
June, 2019
168
July, 2018
117
October, 2019
96
July, 2019
87
November, 2018
63
December, 2017
60
March, 2020
59
September, 2020
50
November, 2019
49
April, 2018
47
September, 2023
41
September, 2018
35
December, 2018
28
May, 2019
23
February, 2018
23
February, 2020
23
January, 2019
23
October, 2018
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
10
October, 2017
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
5
May, 2024
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
209
fastq
164
bam
138
bigWig
89
tsv
34
bed narrowPeak
19
zippedFastqFolder
17
bed bed3+
11
bigBed narrowPeak
10
tagAlign
4
bed bedMethyl
4
bed broadPeak
4
bigBed bedMethyl
4
bigBed broadPeak
Organism
246
Homo sapiens
Biosample type
136
tissue
80
primary cell
31
in vitro differentiated cells
Organ
141
pancreas
56
connective tissue
34
epithelium
adipose tissue
22
liver
7
musculature of body
Project
188
AMP
59
HPAP
Genome assembly (visualization)
141
hg19
135
GRCh38
Lab
188
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
11
missing controlled_by
Audit category:
6
inconsistent control read length
organ_slims!
adipose tissue
ureter
target.investigated_as!
histone
BIOSAMPLE
ASSAY
247 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
RRBS
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
89
14
1
1
liver
16
1
3
skeletal muscle tissue
3
4
pancreas
2
right lobe of liver
1
1
primary cell
Langerhans cell
40
pancreatic alpha cell
15
6
3
pancreatic beta cell
1
6
2
skeletal muscle myoblast
3
1
2
pancreatic acinar cell
1
in vitro differentiated cells
adipocyte
30
1
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