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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
ChIP-seq
89
total RNA-seq
47
single cell RNA-seq
9
WGBS
6
RRBS
5
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
167
DNA binding
136
Transcription
15
DNA methylation
8
DNA accessibility
Target of assay
185
histone modification
184
histone
broad histone mark
80
narrow histone mark
47
transcription factor
38
control
8
RNA binding protein
3
chromatin remodeller
Date released
683
February, 2021
November, 2017
341
May, 2020
305
August, 2021
297
May, 2021
279
August, 2017
236
October, 2019
190
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
95
July, 2019
88
November, 2018
67
December, 2017
59
May, 2019
58
March, 2020
55
October, 2018
47
September, 2023
45
November, 2019
43
April, 2019
40
September, 2020
35
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
May, 2024
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
13
October, 2017
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
5
September, 2018
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
215
fastq
210
bam
200
bigWig
89
tsv
75
bed narrowPeak
40
tagAlign
27
bed bed3+
21
bigBed narrowPeak
19
bed broadPeak
9
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
323
Homo sapiens
Biosample type
258
tissue
48
in vitro differentiated cells
20
primary cell
Organ
156
pancreas
85
connective tissue
47
kidney
37
adipose tissue
35
liver
epithelium
14
musculature of body
Project
279
AMP
47
KPMP
Genome assembly (visualization)
204
hg19
189
GRCh38
Lab
279
AMP-T2D consortium
47
KPMP
Audit category:
34
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
month_released!
November, 2017
organ_slims!
epithelium
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
326 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
RRBS
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
28
89
1
1
kidney
47
liver
29
3
1
subcutaneous abdominal adipose tissue
16
3
skeletal muscle tissue
10
4
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in vitro differentiated cells
adipocyte
47
1
primary cell
skeletal muscle myoblast
9
1
2
pancreatic endocrine cell
8
See all biosamples
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