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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
82
ChIP-seq
47
single cell RNA-seq
6
WGBS
5
RRBS
4
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
136
Transcription
82
DNA binding
11
DNA methylation
9
DNA accessibility
Target of assay
histone
166
histone modification
90
broad histone mark
75
narrow histone mark
43
transcription factor
39
control
8
RNA binding protein
3
chromatin remodeller
Date released
712
February, 2021
270
August, 2021
259
May, 2021
205
February, 2023
197
June, 2019
191
August, 2017
168
July, 2018
160
May, 2022
147
May, 2020
116
October, 2019
98
July, 2019
59
September, 2020
58
March, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
November, 2018
34
December, 2018
28
May, 2019
24
February, 2020
23
February, 2018
20
April, 2019
19
April, 2020
18
January, 2019
18
November, 2017
17
December, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
169
fastq
166
bam
144
bigWig
89
tsv
29
bed narrowPeak
18
bed bed3+
11
bigBed narrowPeak
8
tagAlign
5
bed bedMethyl
5
bigBed bedMethyl
4
bed broadPeak
4
bigBed broadPeak
Organism
237
Homo sapiens
Biosample type
186
tissue
31
in vitro differentiated cells
21
primary cell
Organ
122
pancreas
56
connective tissue
47
kidney
25
adipose tissue
liver
15
epithelium
7
musculature of body
Project
191
AMP
47
KPMP
Genome assembly (visualization)
146
hg19
140
GRCh38
Lab
191
AMP-T2D consortium
47
KPMP
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
organ_slims!
liver
target.investigated_as!
histone
BIOSAMPLE
ASSAY
238 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
89
14
1
1
kidney
47
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
skeletal muscle tissue
3
4
+ See 3 more…
in vitro differentiated cells
adipocyte
30
1
primary cell
pancreatic alpha cell
6
1
pancreatic beta cell
6
1
skeletal muscle myoblast
3
1
2
pancreatic acinar cell
1
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