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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
89
total RNA-seq
6
RRBS
5
DNase-seq
3
WGBS
1
ATAC-seq
1
FAIRE-seq
Assay category
212
DNA binding
89
Transcription
9
DNA methylation
7
DNA accessibility
Target of assay
153
histone modification
152
histone
83
broad histone mark
68
narrow histone mark
35
transcription factor
32
control
RNA binding protein
3
chromatin remodeller
Date released
368
May, 2021
365
November, 2017
341
May, 2020
317
August, 2017
311
August, 2021
297
February, 2021
278
October, 2019
195
June, 2019
152
February, 2023
135
July, 2018
120
May, 2022
111
May, 2019
83
July, 2019
76
April, 2019
73
December, 2017
66
November, 2018
57
March, 2020
47
September, 2023
45
October, 2018
44
November, 2019
40
September, 2020
39
February, 2018
35
May, 2024
33
December, 2018
24
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
14
May, 2023
12
September, 2018
10
November, 2020
7
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2022
1
October, 2022
Available data
232
fastq
230
bigWig
228
bam
115
bed narrowPeak
89
tsv
77
tagAlign
38
bed broadPeak
35
bigBed narrowPeak
27
bed bed3+
13
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
310
Homo sapiens
Biosample type
225
tissue
64
in vitro differentiated cells
28
primary cell
Organ
186
pancreas
121
connective tissue
adipose tissue
54
liver
epithelium
26
musculature of body
Project
317
AMP
Genome assembly (visualization)
236
hg19
209
GRCh38
Lab
317
AMP-T2D consortium
Audit category:
26
missing controlled_by
Audit category:
12
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
adipose tissue
epithelium
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
317 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
DNase-seq
WGBS
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
40
89
1
1
liver
48
1
3
skeletal muscle tissue
22
4
pancreas
14
right lobe of liver
1
1
in vitro differentiated cells
adipocyte
63
1
primary cell
skeletal muscle myoblast
13
1
2
pancreatic endocrine cell
12
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