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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
148
ChIP-seq
9
WGBS
6
RRBS
4
DNase-seq
2
ATAC-seq
Assay category
148
DNA binding
15
DNA methylation
6
DNA accessibility
Target of assay
133
histone modification
132
histone
77
broad histone mark
narrow histone mark
40
transcription factor
29
control
6
RNA binding protein
3
chromatin remodeller
Date released
683
February, 2021
368
November, 2017
314
May, 2020
304
August, 2021
276
May, 2021
197
June, 2019
169
August, 2017
139
October, 2019
118
February, 2023
101
July, 2019
96
May, 2022
85
May, 2019
81
November, 2018
78
December, 2017
57
April, 2019
50
March, 2020
47
September, 2023
40
September, 2020
35
December, 2018
31
February, 2018
27
January, 2019
25
May, 2024
23
February, 2020
23
October, 2018
19
April, 2020
16
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
95
fastq
90
bam
83
bigWig
63
bed narrowPeak
46
tagAlign
18
bed broadPeak
17
bigBed narrowPeak
14
bed bed3+
10
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
169
Homo sapiens
Biosample type
105
tissue
52
in vitro differentiated cells
12
primary cell
Organ
pancreas
97
connective tissue
45
adipose tissue
41
liver
21
epithelium
19
musculature of body
Project
169
AMP
Genome assembly (visualization)
87
hg19
73
GRCh38
Lab
169
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
eye
pancreas
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
169 results
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Clear Filters
ChIP-seq
WGBS
RRBS
DNase-seq
ATAC-seq
tissue
liver
35
3
1
subcutaneous abdominal adipose tissue
25
3
skeletal muscle tissue
15
4
white adipose tissue
12
adipose tissue
1
3
+ See 2 more…
in vitro differentiated cells
adipocyte
51
1
primary cell
skeletal muscle myoblast
9
1
2
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