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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 274ChIP-seq
  • 89total RNA-seq
  • 9WGBS
  • 5ATAC-seq
  • 5DNase-seq
  • 2RRBS
  • 1FAIRE-seq
Assay category
  • 274DNA binding
  • 89Transcription
  • 11DNA accessibility
  • 11DNA methylation
Target of assay
  • 180histone modification
  • 179histone
  • 97broad histone mark
  • 81narrow histone mark
  • 47control
  • 47transcription factor
  • 8RNA binding protein
  • 3chromatin remodeller
Date released
  • 715February, 2021
  • 406November, 2017
  • 399May, 2021
  • 385August, 2017
  • 341May, 2020
  • 319August, 2021
  • 314October, 2019
  • 205February, 2023
  • 198May, 2022
  • 175June, 2019
  • 168July, 2018
  • 113May, 2019
  • 98July, 2019
  • 94December, 2017
  • 88November, 2018
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 61November, 2019
  • 59March, 2020
  • 59September, 2020
  • 49April, 2018
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 23February, 2020
  • 23October, 2017
  • 19April, 2020
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 11September, 2017
  • 10December, 2019
  • 7August, 2020
  • 7January, 2018
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
Available data
  • 285fastq
  • 282bam
  • 259bigWig
  • 129bed narrowPeak
  • 89tsv
  • 70tagAlign
  • 42bigBed narrowPeak
  • 33bed bed3+
  • 28bed broadPeak
  • 15bigBed broadPeak
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 378Homo sapiens
Biosample type
  • 258tissue
  • 68in vitro differentiated cells
  • 59primary cell
Organ
  • 188pancreas
  • 125connective tissue
  • 57adipose tissue
  • 54liver
  • 29epithelium
  • musculature of body
Project
  • 385AMP
Genome assembly (visualization)
  • 261hg19
  • 249GRCh38
Lab
  • 385AMP-T2D consortium
Audit category:
  • 39missing controlled_by
Audit category:
  • 16inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • musculature of body
BIOSAMPLE
ASSAY

385 results

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Clear Filters
ChIP-seq
total RNA-seq
WGBS
ATAC-seq
DNase-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans428911
liver4831
subcutaneous abdominal adipose tissue363
pancreas14
white adipose tissue12
in vitro differentiated cells
adipocyte671
primary cell
skeletal muscle myoblast1521
pancreatic alpha cell131
pancreatic beta cell131
pancreatic endocrine cell12
pancreatic acinar cell1
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