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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 202ChIP-seq
  • 9WGBS
  • 6RRBS
  • 4DNase-seq
  • 2ATAC-seq
Assay category
  • 202DNA binding
  • 15DNA methylation
  • 6DNA accessibility
Target of assay
  • 133histone modification
  • 132histone
  • 77broad histone mark
  • 54narrow histone mark
  • 40transcription factor
  • 29control
  • 6RNA binding protein
  • 3chromatin remodeller
Date released
  • 683February, 2021
  • 406November, 2017
  • 341May, 2020
  • 338May, 2021
  • 315August, 2021
  • 296October, 2019
  • 223August, 2017
  • 214June, 2019
  • 149February, 2023
  • 118May, 2019
  • 102July, 2019
  • 96May, 2022
  • 94December, 2017
  • 81November, 2018
  • 80April, 2019
  • 50March, 2020
  • 47September, 2023
  • 40May, 2024
  • 40September, 2020
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 24February, 2020
  • 23October, 2018
  • 19April, 2020
  • 18October, 2017
  • 15May, 2023
  • 11July, 2018
  • 10April, 2018
  • 10December, 2019
  • 8January, 2018
  • 8January, 2021
  • 6November, 2019
  • 6November, 2020
  • 5March, 2023
  • 2June, 2018
  • 1August, 2018
  • 1July, 2025
  • 1October, 2022
  • 1September, 2018
Available data
  • 119fastq
  • 114bam
  • 113bigWig
  • 93bed narrowPeak
  • 69tagAlign
  • 29bed broadPeak
  • 25bigBed narrowPeak
  • 15bigBed broadPeak
  • 14bed bed3+
  • 6bed bedMethyl
  • 6bigBed bedMethyl
Organism
  • 223Homo sapiens
Biosample type
  • 137tissue
  • 68in vitro differentiated cells
  • 18primary cell
Organ
  • pancreas
  • 125connective tissue
  • 57adipose tissue
  • 54liver
  • 29epithelium
  • 26musculature of body
Project
  • 223AMP
Genome assembly (visualization)
  • 117hg19
  • 97GRCh38
Lab
  • 223AMP-T2D consortium
Audit category:
  • 17missing controlled_by
Audit category:
  • 8inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

223 results

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Clear Filters
ChIP-seq
WGBS
RRBS
DNase-seq
ATAC-seq
tissue
liver4831
subcutaneous abdominal adipose tissue363
skeletal muscle tissue224
white adipose tissue12
adipose tissue23
in vitro differentiated cells
adipocyte671
primary cell
skeletal muscle myoblast1512
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