Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 264ChIP-seq
  • 89total RNA-seq
  • 9WGBS
  • 6RRBS
  • 5ATAC-seq
  • 4DNase-seq
  • 1FAIRE-seq
Assay category
  • 264DNA binding
  • 89Transcription
  • 15DNA methylation
  • 10DNA accessibility
Target of assay
  • 187histone modification
  • 186histone
  • 103broad histone mark
  • 82narrow histone mark
  • 48control
  • 29transcription factor
  • 7RNA binding protein
  • 3chromatin remodeller
Date released
  • 704February, 2021
  • 406November, 2017
  • 378August, 2017
  • 271August, 2021
  • 265May, 2021
  • 264October, 2019
  • 253May, 2020
  • 198May, 2022
  • 188June, 2019
  • 158February, 2023
  • 124July, 2018
  • 120May, 2019
  • 91December, 2017
  • 86November, 2018
  • 79April, 2019
  • 75October, 2018
  • 72July, 2019
  • 72September, 2018
  • 60November, 2019
  • 59September, 2020
  • 47September, 2023
  • 40May, 2024
  • 38February, 2018
  • 35December, 2018
  • 32March, 2020
  • 30January, 2019
  • 19April, 2020
  • 16October, 2017
  • 15May, 2023
  • 14January, 2021
  • 12November, 2020
  • 10April, 2018
  • 10December, 2019
  • 9September, 2017
  • 8January, 2018
  • 7August, 2020
  • 4March, 2023
  • 2June, 2018
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 254fastq
  • 249bam
  • 241bigWig
  • 124bed narrowPeak
  • 89tsv
  • 85tagAlign
  • 41bed broadPeak
  • 41bigBed narrowPeak
  • 15bigBed broadPeak
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 1bed bed3+
Organism
  • 371Homo sapiens
Biosample type
  • 258tissue
  • 61in vitro differentiated cells
  • 59primary cell
Organ
  • 169pancreas
  • 114connective tissue
  • 53adipose tissue
  • 51liver
  • 29epithelium
  • 26musculature of body
Project
  • 378AMP
Genome assembly (visualization)
  • 243hg19
  • 216GRCh38
Lab
  • 378AMP-T2D consortium
Audit category:
  • 25missing controlled_by
Audit category:
  • 12inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

378 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans24891
liver4531
subcutaneous abdominal adipose tissue363
skeletal muscle tissue224
pancreas14
in vitro differentiated cells
adipocyte601
primary cell
skeletal muscle myoblast1512
pancreatic alpha cell131
pancreatic beta cell131
pancreatic endocrine cell12
pancreatic acinar cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego