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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 248ChIP-seq
  • 89total RNA-seq
  • 9WGBS
  • 5ATAC-seq
  • 2RRBS
  • 1DNase-seq
  • 1FAIRE-seq
Assay category
  • 248DNA binding
  • 89Transcription
  • 11DNA methylation
  • 7DNA accessibility
Target of assay
  • 175histone modification
  • 174histone
  • 97broad histone mark
  • 76narrow histone mark
  • 46control
  • 27transcription factor
  • 5RNA binding protein
  • 2chromatin remodeller
Date released
  • 672February, 2021
  • 355August, 2017
  • 253August, 2021
  • 251May, 2021
  • 198May, 2022
  • 197May, 2020
  • 190October, 2019
  • 156June, 2019
  • 152February, 2023
  • 123July, 2018
  • 111November, 2017
  • 106May, 2019
  • 78April, 2019
  • 72September, 2018
  • 68October, 2018
  • 59September, 2020
  • 48July, 2019
  • 47September, 2023
  • 40May, 2024
  • 38February, 2018
  • 37November, 2019
  • 32December, 2017
  • 24November, 2018
  • 19April, 2020
  • 16March, 2020
  • 16October, 2017
  • 15May, 2023
  • 11January, 2021
  • 10April, 2018
  • 9January, 2019
  • 9September, 2017
  • 8January, 2018
  • 7August, 2020
  • 7December, 2018
  • 6November, 2020
  • 4March, 2023
  • 3December, 2019
  • 2June, 2018
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 232fastq
  • 230bam
  • 223bigWig
  • 107bed narrowPeak
  • 89tsv
  • 73tagAlign
  • 26bed broadPeak
  • 24bigBed narrowPeak
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3+
Organism
  • 348Homo sapiens
Biosample type
  • 255tissue
  • 60in vitro differentiated cells
  • 40primary cell
Organ
  • 168pancreas
  • 113connective tissue
  • 53adipose tissue
  • 50liver
  • 28epithelium
  • 24musculature of body
Project
  • 355AMP
Genome assembly (visualization)
  • 221hg19
  • 202GRCh38
Lab
  • 355AMP-T2D consortium
Audit category:
  • 25missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

355 results

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Clear Filters
ChIP-seq
total RNA-seq
WGBS
ATAC-seq
RRBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans24891
liver453
subcutaneous abdominal adipose tissue363
skeletal muscle tissue222
pancreas14
in vitro differentiated cells
adipocyte60
primary cell
pancreatic alpha cell131
pancreatic beta cell121
pancreatic endocrine cell12
pancreatic acinar cell1
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