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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 187ChIP-seq
  • 89total RNA-seq
  • 9WGBS
  • 6RRBS
  • 5ATAC-seq
  • 5DNase-seq
  • 1FAIRE-seq
Assay category
  • 187DNA binding
  • 89Transcription
  • 15DNA methylation
  • 11DNA accessibility
Target of assay
  • 199histone modification
  • 198histone
  • broad histone mark
  • 88narrow histone mark
  • 50control
  • 47transcription factor
  • 8RNA binding protein
  • 3chromatin remodeller
Date released
  • 715February, 2021
  • 356November, 2017
  • 341May, 2020
  • 323May, 2021
  • 310August, 2021
  • 302August, 2017
  • 259October, 2019
  • 210June, 2019
  • 205February, 2023
  • 200May, 2022
  • 168July, 2018
  • 108July, 2019
  • 88November, 2018
  • 79December, 2017
  • 64March, 2020
  • 62May, 2019
  • 59September, 2020
  • 57October, 2018
  • 56September, 2018
  • 55November, 2019
  • 49April, 2018
  • 47September, 2023
  • 43April, 2019
  • 35December, 2018
  • 31February, 2018
  • 26January, 2019
  • 25February, 2020
  • 20May, 2024
  • 19April, 2020
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 13October, 2017
  • 11September, 2017
  • 10December, 2019
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
Available data
  • 238fastq
  • 233bam
  • 211bigWig
  • 89tsv
  • 86bed narrowPeak
  • 40tagAlign
  • 27bed bed3+
  • 24bigBed narrowPeak
  • 19bed broadPeak
  • 9bigBed broadPeak
  • 6bed bedMethyl
  • 6bigBed bedMethyl
Organism
  • 299Homo sapiens
Biosample type
  • 211tissue
  • 48in vitro differentiated cells
  • 43primary cell
Organ
  • 156pancreas
  • 85connective tissue
  • 37adipose tissue
  • 35liver
  • 23epithelium
  • 14musculature of body
Project
  • 302AMP
Genome assembly (visualization)
  • 215hg19
  • 200GRCh38
Lab
  • 302AMP-T2D consortium
Audit category:
  • 34missing controlled_by
Audit category:
  • 13inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

302 results

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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans288911
liver2931
subcutaneous abdominal adipose tissue163
skeletal muscle tissue104
white adipose tissue12
in vitro differentiated cells
adipocyte471
primary cell
skeletal muscle myoblast912
pancreatic alpha cell101
pancreatic beta cell101
pancreatic endocrine cell8
pancreatic acinar cell1
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