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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ATAC-seq
93
total RNA-seq
34
ChIP-seq
4
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
104
DNA accessibility
97
Transcription
34
DNA binding
1
3D chromatin structure
Target of assay
28
transcription factor
4
control
2
RNA binding protein
2
chromatin remodeller
Date released
406
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
329
February, 2021
318
August, 2021
313
October, 2019
217
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
114
fastq
94
bed narrowPeak
37
bam
36
bigWig
30
bigBed narrowPeak
19
tsv
10
bed bed3
7
txt
4
bed bed3+
3
bed bedgraph
Organism
241
Homo sapiens
Biosample type
101
tissue
91
primary cell
34
cell line
16
in vitro differentiated cells
Organ
59
pancreas
55
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
27
blood
27
bodily fluid
15
connective tissue
8
bone element
8
skeleton
7
spleen
adipose tissue
1
brain
1
liver
Project
143
AMP
76
HPAP
23
T1D
Genome assembly (visualization)
77
hg19
68
GRCh38
Lab
140
AMP-T2D consortium
76
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
1
inconsistent control
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
242 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
tissue
coronary artery
35
islet of Langerhans
11
5
2
retina
15
2
pigmented layer of retina
12
2
spleen
7
+ See 6 more…
primary cell
exocrine cell
39
pancreatic alpha cell
27
2
pancreatic beta cell
10
gabaergic neuron
3
glutamatergic neuron
3
+ See 3 more…
cell line
GM12878
27
EndoC_BH1
3
2
1
HepG2
1
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
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