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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
762
total RNA-seq
189
ChIP-seq
86
ATAC-seq
84
RNA microarray
52
pCHi-C
27
snATAC-seq
21
single cell RNA-seq
12
Hi-C
6
WGBS
3
snDrop-seq
1
DNAme array
Assay category
783
Transcription
189
DNA binding
113
DNA accessibility
12
3D chromatin structure
7
DNA methylation
Target of assay
153
histone
153
histone modification
82
broad histone mark
71
narrow histone mark
22
transcription factor
14
control
6
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
927
bam
908
bigWig
800
tsv
196
bed narrowPeak
98
tagAlign
89
txt
49
fastq
15
bedpe bed3+
12
hic
6
csv
4
bed bed3+
4
bed bedgraph
2
bed bed3
2
ibed
Organism
1243
Homo sapiens
Biosample type
665
tissue
258
primary cell
172
in vitro differentiated cells
144
cell line
4
stem cell
Organ
461
connective tissue
389
adipose tissue
165
pancreas
151
bone element
83
epithelium
76
heart
70
blood vessel
70
vasculature
66
artery
10
kidney
8
skeleton
6
limb
6
liver
5
musculature of body
2
brain
2
embryo
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
urinary bladder
1
vein
Project
1038
AMP
160
T1D
45
HPAP
Genome assembly (visualization)
984
hg19
920
GRCh38
Lab
963
AMP-T2D consortium
235
Kyle Gaulton, UCSD
45
Klaus Kaestner, Upenn
Audit category:
257
inconsistent ontology term
32
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
1243 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
RNA microarray
pCHi-C
snATAC-seq
single cell RNA-seq
Hi-C
WGBS
snDrop-seq
DNAme array
tissue
adipose tissue
381
1
bone element
84
islet of Langerhans
57
2
21
1
bone tissue
58
kidney
5
+ See 35 more…
primary cell
monocyte
52
85
13
1
1
Langerhans cell
27
12
CD8-positive, alpha-beta T cell
2
33
1
pancreatic alpha cell
2
6
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
+ See 16 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
1
cardiac precursors (cardiac muscle cell)
18
induced pluripotent stem cell
9
adipocyte
4
4
+ See 15 more…
cell line
EndoC_BH1
33
15
19
1
smooth muscle cell of the coronary artery
52
6
8
HepG2
1
1
early embryonic cell
2
iPSC derived cell line
2
+ See 4 more…
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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