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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
total RNA-seq
99
ATAC-seq
84
RNA microarray
55
single cell RNA-seq
49
snATAC-seq
47
WGBS
8
ChIP-seq
3
snDrop-seq
2
pCHi-C
Assay category
240
Transcription
148
DNA accessibility
47
DNA methylation
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
406
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
329
February, 2021
318
August, 2021
313
October, 2019
217
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
213
bam
188
bigWig
176
tsv
134
zippedFastqFolder
96
txt
72
fastq
61
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
3
bed bed3+
2
bed bed3
Organism
532
Homo sapiens
Biosample type
225
tissue
185
primary cell
96
cell line
26
in vitro differentiated cells
Organ
456
connective tissue
adipose tissue
150
bone element
139
pancreas
115
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
43
liver
8
kidney
8
skeleton
6
limb
2
musculature of body
Project
353
AMP
179
HPAP
Genome assembly (visualization)
230
hg19
185
GRCh38
Lab
289
AMP-T2D consortium
179
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
128
inconsistent ontology term
33
audit script error
1
inconsistent replicate
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
532 results
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Clear Filters
total RNA-seq
ATAC-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
snDrop-seq
pCHi-C
tissue
bone element
84
bone tissue
58
liver
20
20
1
islet of Langerhans
6
18
kidney
5
+ See 12 more…
primary cell
Langerhans cell
45
48
pancreatic alpha cell
22
2
31
pancreatic beta cell
13
16
pancreatic acinar cell
4
1
osteoblast
1
1
1
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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