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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
total RNA-seq
107
ATAC-seq
53
ChIP-seq
33
pCHi-C
8
Hi-C
5
GRO-seq
3
single cell RNA-seq
Assay category
207
Transcription
107
DNA accessibility
53
DNA binding
8
3D chromatin structure
Target of assay
30
histone
30
histone modification
30
narrow histone mark
23
control
Date released
649
February, 2021
411
August, 2017
400
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
211
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
96
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
301
bam
290
bigWig
235
tsv
50
tagAlign
30
bed narrowPeak
11
bedpe bed3+
9
fastq
8
hic
2
ibed
Organism
413
Homo sapiens
Biosample type
232
tissue
150
primary cell
13
cell line
13
in vitro differentiated cells
5
stem cell
Organ
197
liver
17
pancreas
9
epithelium
7
heart
6
musculature of body
4
blood vessel
4
connective tissue
vasculature
3
adipose tissue
2
brain
2
intestine
2
kidney
1
adrenal gland
1
blood
1
bodily fluid
1
embryo
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
361
AMP
52
T1D
Genome assembly (visualization)
295
hg19
225
GRCh38
5
hg18
Lab
368
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
organ_slims!
vasculature
BIOSAMPLE
ASSAY
413 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
Hi-C
GRO-seq
single cell RNA-seq
tissue
liver
144
50
1
1
islet of Langerhans
2
2
2
psoas muscle
2
1
2
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 16 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 26 more…
cell line
EndoC_BH1
2
2
1
early embryonic cell
2
GM12878
1
HepG2
1
MCF-7
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
Posterior foregut
1
definitive endodermal cell
1
embryonic stem cell
1
+ See 3 more…
stem cell
hESC
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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