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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
166
ChIP-seq
8
ATAC-seq
3
single cell RNA-seq
1
pCHi-C
Assay category
195
DNA accessibility
166
DNA binding
3
Transcription
Target of assay
123
histone
123
histone modification
76
broad histone mark
47
narrow histone mark
34
control
9
RNA binding protein
9
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
356
bam
324
bigWig
319
bed narrowPeak
313
bigBed narrowPeak
191
bed broadPeak
187
bed bed3+
187
bigBed broadPeak
21
fastq
14
tagAlign
3
tsv
1
bedpe bed3+
Organism
365
Homo sapiens
Biosample type
301
tissue
63
primary cell
1
in vitro differentiated cells
Organ
86
kidney
74
brain
57
vasculature
56
heart
55
blood vessel
50
musculature of body
39
limb
28
epithelium
20
connective tissue
18
ureter
14
pancreas
7
artery
7
eye
3
adipose tissue
2
liver
1
spleen
Project
365
AMP
Genome assembly (visualization)
323
GRCh38
300
hg19
Lab
364
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
29
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
April, 2020
BIOSAMPLE
ASSAY
365 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
pCHi-C
tissue
brain
12
15
muscle of leg
13
7
heart
18
ascending aorta
1
16
muscle of arm
17
+ See 42 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
kidney epithelial cell
1
5
cardiac muscle cell
1
3
+ See 19 more…
in vitro differentiated cells
white fat cell
1
See all biosamples
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