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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
10
MeRIP-seq
8
ATAC-seq
4
total RNA-seq
3
single cell RNA-seq
1
DNase-seq
1
pCHi-C
Assay category
92
DNA binding
9
DNA accessibility
7
Transcription
Target of assay
67
histone
67
histone modification
43
broad histone mark
25
control
24
narrow histone mark
5
RNA binding protein
5
nucleotide modification
5
transcription factor
Date released
715
February, 2021
411
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
315
November, 2017
228
October, 2019
204
February, 2023
200
May, 2022
188
June, 2019
168
July, 2018
94
December, 2017
92
May, 2019
90
July, 2019
86
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
February, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
October, 2017
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
107
bam
87
bigWig
80
bed narrowPeak
73
bigBed narrowPeak
11
fastq
7
tsv
2
bed broadPeak
1
bed bed3+
1
bedpe bed3+
1
bigBed broadPeak
Organism
119
Homo sapiens
Biosample type
98
tissue
14
primary cell
6
cell line
1
in vitro differentiated cells
Organ
50
blood vessel
50
vasculature
brain
21
heart
20
pancreas
14
epithelium
8
connective tissue
7
limb
7
musculature of body
5
artery
5
kidney
2
adipose tissue
1
spleen
Project
119
AMP
Genome assembly (visualization)
88
hg19
87
GRCh38
Lab
108
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
1
Stephen Parker, UMich
Audit category:
9
inconsistent ontology term
organ_slims!
brain
BIOSAMPLE
ASSAY
119 results
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Clear Filters
ChIP-seq
MeRIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
DNase-seq
pCHi-C
tissue
ascending aorta
16
thoracic aorta
16
aorta
13
germinal matrix
12
right atrium auricular region
10
+ See 7 more…
primary cell
osteoblast
1
4
1
kidney epithelial cell
5
pancreatic alpha cell
2
pancreatic acinar cell
1
cell line
EndoC_BH1
6
in vitro differentiated cells
white fat cell
1
See all biosamples
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