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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
ChIP-seq
9
ATAC-seq
4
MeRIP-seq
4
total RNA-seq
1
DNase-seq
1
pCHi-C
Assay category
130
DNA binding
10
DNA accessibility
4
Transcription
Target of assay
101
histone
101
histone modification
66
broad histone mark
35
narrow histone mark
27
control
4
RNA binding protein
4
transcription factor
2
nucleotide modification
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
136
bam
112
bigWig
107
bed narrowPeak
100
bigBed narrowPeak
18
fastq
14
tagAlign
5
bed broadPeak
4
tsv
1
bed bed3+
1
bedpe bed3+
1
bigBed broadPeak
Organism
149
Homo sapiens
Biosample type
142
tissue
6
primary cell
1
in vitro differentiated cells
Organ
50
blood vessel
50
vasculature
44
brain
21
heart
20
pancreas
epithelium
8
connective tissue
7
limb
7
musculature of body
5
artery
5
kidney
2
adipose tissue
1
spleen
Project
149
AMP
Genome assembly (visualization)
112
GRCh38
112
hg19
Lab
144
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Stephen Parker, UMich
Audit category:
4
missing controlled_by
organ_slims!
epithelium
BIOSAMPLE
ASSAY
149 results
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ChIP-seq
ATAC-seq
MeRIP-seq
total RNA-seq
DNase-seq
pCHi-C
tissue
ascending aorta
16
thoracic aorta
16
brain
15
temporal lobe
15
angular gyrus
13
+ See 11 more…
primary cell
osteoblast
1
4
1
in vitro differentiated cells
white fat cell
1
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