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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
10
total RNA-seq
7
ATAC-seq
3
single cell RNA-seq
2
RNA microarray
Assay category
25
DNA binding
13
Transcription
7
DNA accessibility
Target of assay
14
transcription factor
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
4
control
3
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
38
bigWig
37
fastq
35
bam
21
bed narrowPeak
21
bigBed narrowPeak
14
tsv
Organism
47
Homo sapiens
Biosample type
23
cell line
12
primary cell
10
tissue
2
in vitro differentiated cells
Organ
18
blood
18
bodily fluid
13
epithelium
10
liver
7
pancreas
7
spleen
3
kidney
Project
40
AMP
7
HPAP
Genome assembly (visualization)
38
GRCh38
31
hg19
Lab
40
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
4
audit script error
2
inconsistent ontology term
organ_slims!
stomach
BIOSAMPLE
ASSAY
47 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
cell line
GM12878
18
HepG2
5
primary cell
hepatocyte
5
pancreatic alpha cell
5
pancreatic beta cell
2
tissue
spleen
7
kidney
1
kidney interstitium
1
renal glomerulus
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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