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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
total RNA-seq
51
single cell RNA-seq
7
ATAC-seq
2
RNA microarray
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
180
Transcription
7
DNA accessibility
1
3D chromatin structure
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
293
October, 2019
211
June, 2019
200
May, 2022
174
February, 2023
168
July, 2018
120
May, 2019
107
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
176
bigWig
173
tsv
169
bam
57
fastq
1
hic
Organism
186
Homo sapiens
Biosample type
123
tissue
61
primary cell
2
cell line
2
in vitro differentiated cells
2
stem cell
Organ
164
pancreas
46
epithelium
5
liver
3
kidney
2
connective tissue
Project
178
AMP
7
HPAP
4
community
1
ITG
Genome assembly (visualization)
177
GRCh38
169
hg19
Lab
178
AMP-T2D consortium
7
Klaus Kaestner, Upenn
4
Anna Gloyn, Oxford
1
ITG
Audit category:
8
inconsistent ontology term
4
audit script error
organ_slims!
eye
BIOSAMPLE
ASSAY
190 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
RNA microarray
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
islet of Langerhans
120
kidney
1
kidney interstitium
1
renal glomerulus
1
primary cell
pancreatic alpha cell
7
5
pancreatic beta cell
9
2
hepatocyte
5
pancreatic acinar cell
5
pancreatic delta cell
4
+ See 12 more…
cell line
EndoC-BH1
1
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
stem cell
SB Ad3.1
1
1
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