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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
19
ChIP-seq
11
ATAC-seq
1
Hi-C
Assay category
30
Transcription
19
DNA binding
11
DNA accessibility
1
3D chromatin structure
Target of assay
14
transcription factor
7
histone
7
histone modification
RNA binding protein
6
chromatin remodeller
4
broad histone mark
4
control
3
narrow histone mark
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
32
fastq
30
tsv
27
bigWig
25
bam
15
bed narrowPeak
15
bigBed narrowPeak
1
bed broadPeak
1
bedpe
1
hic
Organism
61
Homo sapiens
Biosample type
37
tissue
17
cell line
7
primary cell
Organ
13
pancreas
12
blood
12
bodily fluid
12
brain
7
epithelium
7
spleen
6
liver
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
2
connective tissue
2
musculature of body
1
eye
1
nerve
1
spinal cord
Project
54
AMP
7
HPAP
Genome assembly (visualization)
29
GRCh38
23
hg19
Lab
49
AMP-T2D consortium
7
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
1
inconsistent ontology term
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
61 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
tissue
spleen
7
islet of Langerhans
4
1
Ammon's horn
1
C1 segment of cervical spinal cord
1
amygdala
1
+ See 22 more…
cell line
GM12878
12
HepG2
5
primary cell
pancreatic alpha cell
5
pancreatic beta cell
2
See all biosamples
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