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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ATAC-seq
6
total RNA-seq
3
ChIP-seq
1
Hi-C
1
pCHi-C
Assay category
11
DNA accessibility
6
Transcription
3
DNA binding
1
3D chromatin structure
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
0
January, 2019
Available data
17
bigWig
7
fastq
7
tsv
6
bam
3
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
22
Homo sapiens
Biosample type
10
tissue
7
primary cell
5
cell line
Organ
22
pancreas
18
blood
18
bodily fluid
14
brain
13
epithelium
10
heart
9
liver
8
spleen
7
blood vessel
7
musculature of body
7
vasculature
4
connective tissue
3
adipose tissue
3
limb
2
artery
2
intestine
2
kidney
1
adrenal gland
1
esophagus
1
eye
1
gonad
1
large intestine
1
lung
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
8
AMP
7
HPAP
7
T1D
Genome assembly (visualization)
13
GRCh38
11
hg19
Lab
15
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
BIOSAMPLE
ASSAY
22 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
2
2
2
pancreas
1
1
1
body of pancreas
1
primary cell
pancreatic alpha cell
5
pancreatic beta cell
2
cell line
EndoC_BH1
2
2
1
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