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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
11
ChIP-seq
7
ATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
34
Transcription
11
DNA binding
7
DNA accessibility
1
3D chromatin structure
Target of assay
transcription factor
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
4
control
3
narrow histone mark
Date released
710
February, 2021
383
May, 2021
364
August, 2017
341
May, 2020
308
August, 2021
307
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
162
November, 2017
115
May, 2019
108
July, 2019
74
April, 2019
73
September, 2018
64
March, 2020
61
October, 2018
60
November, 2019
59
September, 2020
52
December, 2017
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
25
February, 2020
24
November, 2018
23
October, 2017
19
April, 2020
16
January, 2019
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
30
tsv
23
fastq
19
bigWig
16
bam
7
bed narrowPeak
7
bigBed narrowPeak
1
hic
Organism
49
Homo sapiens
Biosample type
32
tissue
11
cell line
8
primary cell
2
stem cell
Organ
12
brain
8
pancreas
7
epithelium
7
spleen
6
liver
4
blood
4
bodily fluid
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
2
connective tissue
2
musculature of body
1
eye
1
nerve
1
spinal cord
Project
41
AMP
7
HPAP
4
community
1
ITG
Genome assembly (visualization)
20
GRCh38
12
hg19
Lab
41
AMP-T2D consortium
7
Klaus Kaestner, Upenn
4
Anna Gloyn, Oxford
1
ITG
Audit category:
1
inconsistent ontology term
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
53 results
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total RNA-seq
ChIP-seq
ATAC-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
spleen
7
Ammon's horn
1
C1 segment of cervical spinal cord
1
amygdala
1
anterior cingulate cortex
1
+ See 21 more…
cell line
HepG2
5
GM12878
4
EndoC-BH1
1
1
primary cell
pancreatic alpha cell
5
pancreatic beta cell
2
chondrocytes
1
stem cell
SB Ad3.1
1
1
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