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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ATAC-seq
81
single cell RNA-seq
56
total RNA-seq
41
WGBS
25
ChIP-seq
22
snATAC-seq
Assay category
137
Transcription
106
DNA accessibility
41
DNA methylation
25
DNA binding
Target of assay
14
transcription factor
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
4
control
3
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
61
fastq
59
bed narrowPeak
54
bam
53
bigWig
30
tsv
21
bigBed narrowPeak
7
txt
1
bed bed3+
Organism
309
Homo sapiens
Biosample type
145
tissue
141
primary cell
23
cell line
Organ
112
pancreas
87
epithelium
47
kidney
46
liver
18
blood
18
bodily fluid
12
brain
7
spleen
4
musculature of body
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
2
connective tissue
1
eye
1
nerve
1
spinal cord
Project
141
HPAP
121
AMP
47
KPMP
Genome assembly (visualization)
65
hg19
33
GRCh38
Lab
141
Klaus Kaestner, Upenn
57
AMP-T2D consortium
47
KPMP
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
309 results
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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
WGBS
ChIP-seq
snATAC-seq
tissue
kidney
47
liver
20
20
islet of Langerhans
18
6
spleen
7
skeletal muscle tissue
1
1
+ See 25 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
27
25
pancreatic beta cell
15
16
pancreatic acinar cell
4
cell line
GM12878
18
HepG2
5
See all biosamples
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