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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
total RNA-seq
21
ChIP-seq
7
ATAC-seq
Assay category
28
Transcription
21
DNA binding
7
DNA accessibility
Target of assay
14
transcription factor
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
broad histone mark
4
control
3
narrow histone mark
Date released
356
November, 2017
341
May, 2020
329
February, 2021
323
May, 2021
309
August, 2021
265
August, 2017
258
October, 2019
209
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
96
July, 2019
87
November, 2018
79
December, 2017
63
March, 2020
62
May, 2019
59
September, 2020
56
September, 2018
54
November, 2019
49
April, 2018
47
September, 2023
43
April, 2019
35
December, 2018
34
October, 2018
31
February, 2018
26
January, 2019
23
February, 2020
20
May, 2024
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
12
October, 2017
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
33
fastq
29
bigWig
28
tsv
26
bam
17
bed narrowPeak
17
bigBed narrowPeak
Organism
56
Homo sapiens
Biosample type
26
tissue
23
cell line
7
primary cell
Organ
18
blood
18
bodily fluid
12
brain
8
pancreas
7
epithelium
6
liver
3
blood vessel
3
heart
3
limb
3
spleen
3
vasculature
adipose tissue
2
artery
2
connective tissue
2
musculature of body
1
eye
1
nerve
1
spinal cord
Project
49
AMP
7
HPAP
Genome assembly (visualization)
29
GRCh38
22
hg19
Lab
49
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
1
inconsistent ontology term
organ_slims!
adipose tissue
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
56 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
tissue
spleen
3
Ammon's horn
1
C1 segment of cervical spinal cord
1
amygdala
1
anterior cingulate cortex
1
+ See 19 more…
cell line
GM12878
18
HepG2
5
primary cell
pancreatic alpha cell
5
pancreatic beta cell
2
See all biosamples
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