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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ATAC-seq
5
DNase-seq
3
ChIP-seq
3
total RNA-seq
1
FAIRE-seq
1
Hi-C
Assay category
14
DNA accessibility
3
DNA binding
3
Transcription
1
3D chromatin structure
Target of assay
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
3
control
Date released
80
May, 2022
52
February, 2023
40
September, 2018
33
April, 2018
33
July, 2018
32
February, 2021
24
May, 2021
19
September, 2020
18
June, 2019
15
August, 2017
14
October, 2019
13
July, 2019
7
August, 2020
6
December, 2019
6
November, 2019
6
November, 2020
5
December, 2017
5
March, 2020
5
September, 2017
4
November, 2017
3
August, 2018
3
August, 2021
3
October, 2022
2
May, 2019
2
October, 2018
1
June, 2018
Available data
14
bigWig
11
bam
7
fastq
5
bed narrowPeak
4
bigBed narrowPeak
3
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
hic
1
tar
Organism
21
Homo sapiens
Biosample type
19
primary cell
2
cell line
Organ
26
limb
21
epithelium
19
eye
18
nerve
18
pancreas
15
kidney
14
blood vessel
14
vasculature
9
brain
8
artery
6
vein
3
connective tissue
3
heart
2
liver
1
adipose tissue
1
pituitary gland
1
skin of body
Project
14
AMP
7
HPAP
Genome assembly (visualization)
14
GRCh38
9
hg19
Lab
14
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
1
audit script error
1
inconsistent ontology term
target.investigated_as!
histone
recombinant protein
BIOSAMPLE
ASSAY
21 results
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ATAC-seq
DNase-seq
ChIP-seq
total RNA-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
2
2
1
1
pancreatic alpha cell
5
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
pancreatic beta cell
2
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cell line
glomerular visceral epithelial cell
1
1
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