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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
single cell RNA-seq
77
ChIP-seq
76
ATAC-seq
74
total RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
4
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
174
Transcription
82
DNA accessibility
77
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
39
transcription factor
20
histone
20
histone modification
16
control
11
narrow histone mark
9
broad histone mark
3
RNA binding protein
2
chromatin remodeller
Date released
649
February, 2021
411
August, 2017
400
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
211
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
96
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
January, 2018
7
August, 2020
5
March, 2019
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
136
bed narrowPeak
117
tsv
83
bam
77
bigWig
64
xls
57
txt
35
fastq
30
bigBed narrowPeak
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
347
Homo sapiens
Biosample type
230
tissue
72
cell line
42
in vitro differentiated cells
4
primary cell
Organ
130
kidney
92
heart
36
liver
27
blood
27
bodily fluid
8
embryo
7
spleen
6
blood vessel
6
epithelium
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
348
AMP
Genome assembly (visualization)
135
GRCh38
90
hg19
Lab
180
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
1
inconsistent control
month_released!
January, 2018
March, 2023
organ_slims!
vasculature
BIOSAMPLE
ASSAY
348 results
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Clear Filters
single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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cell line
HepG2
18
9
2
2
1
GM12878
27
H1-hESC
8
EndoC_BH1
2
HEK293T
2
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
21
10
7
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
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