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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
66
total RNA-seq
50
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
4
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
172
Transcription
82
DNA accessibility
50
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
16
control
14
transcription factor
11
narrow histone mark
9
broad histone mark
1
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
397
May, 2021
341
May, 2020
311
August, 2021
310
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
81
December, 2017
80
April, 2019
76
October, 2018
73
November, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
26
February, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
12
January, 2019
11
September, 2017
10
December, 2019
8
December, 2018
8
January, 2021
7
August, 2020
6
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
115
tsv
109
bed narrowPeak
64
xls
57
txt
48
bam
42
bigWig
24
tagAlign
8
fastq
5
bed bed3+
3
bigBed narrowPeak
2
bedpe bed3+
2
hic
1
vcf
Organism
318
Homo sapiens
Biosample type
236
tissue
42
in vitro differentiated cells
37
cell line
4
primary cell
Organ
130
kidney
92
heart
36
liver
blood
27
bodily fluid
embryo
7
spleen
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
319
AMP
Genome assembly (visualization)
100
GRCh38
55
hg19
Lab
151
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
organ_slims!
blood
embryo
gonad
BIOSAMPLE
ASSAY
319 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 12 more…
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
9
18
2
2
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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