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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
total RNA-seq
22
ChIP-seq
20
ATAC-seq
2
STARR-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
37
Transcription
22
DNA binding
20
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
6
histone
6
histone modification
5
control
4
narrow histone mark
2
broad histone mark
1
RNA binding protein
Date released
315
November, 2017
194
May, 2020
76
December, 2017
54
August, 2017
53
November, 2018
43
August, 2021
40
May, 2022
13
February, 2018
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
2
May, 2021
1
December, 2018
1
February, 2020
1
January, 2018
Available data
45
bigWig
37
bed narrowPeak
17
tsv
12
bam
4
tagAlign
3
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
83
Homo sapiens
Biosample type
40
tissue
39
cell line
4
primary cell
Organ
130
kidney
108
pancreas
92
heart
86
epithelium
75
liver
8
embryo
6
blood vessel
6
vasculature
4
connective tissue
2
artery
2
musculature of body
Project
83
AMP
Genome assembly (visualization)
46
hg19
11
GRCh38
Lab
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
12
AMP-T2D consortium
BIOSAMPLE
ASSAY
83 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
liver
20
20
cell line
HepG2
9
18
2
1
1
H1-hESC
8
primary cell
hepatocyte
4
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