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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
84
ATAC-seq
65
total RNA-seq
36
ChIP-seq
6
snATAC-seq
4
Capture-C
3
STARR-seq
2
Hi-C
1
RNA microarray
Assay category
171
Transcription
90
DNA accessibility
36
DNA binding
2
3D chromatin structure
Target of assay
26
histone
26
histone modification
17
broad histone mark
10
control
9
narrow histone mark
Date released
706
February, 2021
399
May, 2021
357
August, 2017
284
August, 2021
238
October, 2019
205
February, 2023
184
June, 2019
168
July, 2018
160
May, 2022
147
May, 2020
113
May, 2019
93
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
61
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
November, 2018
34
December, 2018
31
December, 2017
25
January, 2019
23
October, 2017
21
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
114
tsv
101
bed narrowPeak
64
xls
60
bam
57
txt
44
bigWig
34
tagAlign
17
fastq
6
bigBed narrowPeak
4
bed broadPeak
2
bed bed3+
1
bedpe bed3+
1
hic
Organism
306
Homo sapiens
Biosample type
252
tissue
42
in vitro differentiated cells
13
cell line
Organ
130
kidney
92
heart
liver
16
brain
9
pancreas
8
embryo
6
blood vessel
6
connective tissue
6
epithelium
6
vasculature
2
adipose tissue
2
artery
1
spleen
Project
307
AMP
Genome assembly (visualization)
116
GRCh38
55
hg19
Lab
169
AMP-T2D consortium
128
Katalin Susztak, Upenn
5
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
limb
liver
BIOSAMPLE
ASSAY
307 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
STARR-seq
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 16 more…
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
cell line
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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