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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 106single cell RNA-seq
  • 74ATAC-seq
  • 74total RNA-seq
  • 43ChIP-seq
  • 6snATAC-seq
  • 5STARR-seq
  • 3Hi-C
  • 2Capture-C
  • 1whole genome sequencing assay
Assay category
  • 180Transcription
  • 80DNA accessibility
  • 43DNA binding
  • 33D chromatin structure
  • 1DNA sequencing
Target of assay
  • 20histone
  • 20histone modification
  • 12control
  • 11narrow histone mark
  • 11transcription factor
  • 9broad histone mark
  • 1RNA binding protein
Date released
  • 406November, 2017
  • 397May, 2021
  • 341May, 2020
  • 314August, 2021
  • 310October, 2019
  • 286August, 2017
  • 260February, 2021
  • 200June, 2019
  • 200May, 2022
  • 191February, 2023
  • 166July, 2018
  • 120May, 2019
  • 94December, 2017
  • 90July, 2019
  • 87November, 2018
  • 80April, 2019
  • 73September, 2018
  • 62March, 2020
  • 60November, 2019
  • 59September, 2020
  • 53October, 2018
  • 47April, 2018
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 23February, 2020
  • 22October, 2017
  • 19April, 2020
  • 16January, 2021
  • 14May, 2023
  • 11September, 2017
  • 10December, 2019
  • 10November, 2020
  • 7August, 2020
  • 7January, 2018
  • 5March, 2019
  • 5March, 2023
  • 4October, 2022
  • 3August, 2018
  • 3June, 2018
  • 1August, 2022
  • 1July, 2025
Available data
  • 123tsv
  • 104bed narrowPeak
  • 64xls
  • 57txt
  • 49bam
  • 45bigWig
  • 24tagAlign
  • 3bed bed3+
  • 2bedpe bed3+
  • 2hic
  • 1vcf
Organism
  • 314Homo sapiens
Biosample type
  • 228tissue
  • 44cell line
  • 38in vitro differentiated cells
  • 4primary cell
Organ
  • 130kidney
  • 92heart
  • 35liver
  • 8embryo
  • 6blood vessel
  • 6epithelium
  • 6vasculature
  • connective tissue
  • 4pancreas
  • 2artery
  • 1adipose tissue
Project
  • 314AMP
Genome assembly (visualization)
  • 105GRCh38
  • 56hg19
Lab
  • 150AMP-T2D consortium
  • 128Katalin Susztak, Upenn
  • 36Bing Ren, UCSD
Audit category:
  • 3inconsistent ontology term
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

314 results

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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney8644961
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
cell line
HepG2918211
H1-hESC8
EndoC_BH12
HEK293T2
Synthesized DNA1
in vitro differentiated cells
neural progenitor cell10721
primary cell
hepatocyte4
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