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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
66
total RNA-seq
39
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
172
Transcription
82
DNA accessibility
39
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
11
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
683
February, 2021
400
November, 2017
375
August, 2017
371
May, 2021
341
May, 2020
304
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
74
October, 2018
66
December, 2017
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
35
December, 2018
30
January, 2019
26
February, 2018
25
February, 2020
23
October, 2017
18
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
7
January, 2018
6
September, 2017
5
March, 2019
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
March, 2023
Available data
115
tsv
103
bed narrowPeak
64
xls
57
txt
37
bam
36
bigWig
20
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
304
Homo sapiens
Biosample type
228
tissue
42
in vitro differentiated cells
34
cell line
Organ
130
kidney
92
heart
35
liver
embryo
6
blood vessel
epithelium
6
vasculature
4
connective tissue
4
pancreas
2
artery
Project
304
AMP
Genome assembly (visualization)
94
GRCh38
49
hg19
Lab
136
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
organ_slims!
embryo
epithelium
BIOSAMPLE
ASSAY
304 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
9
18
2
1
1
HEK293T
2
Synthesized DNA
1
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