Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 106single cell RNA-seq
  • 76ATAC-seq
  • 66total RNA-seq
  • 43ChIP-seq
  • 6snATAC-seq
  • 5STARR-seq
  • 4Capture-C
  • 3Hi-C
  • 1RNA microarray
  • 1whole genome sequencing assay
Assay category
  • 172Transcription
  • 82DNA accessibility
  • 43DNA binding
  • 33D chromatin structure
  • 1DNA sequencing
Target of assay
  • 20histone
  • 20histone modification
  • 12control
  • 11narrow histone mark
  • 11transcription factor
  • 9broad histone mark
  • 1RNA binding protein
Date released
  • 715February, 2021
  • 411August, 2017
  • 406November, 2017
  • 397May, 2021
  • 341May, 2020
  • 314October, 2019
  • 311August, 2021
  • 218June, 2019
  • 205February, 2023
  • 200May, 2022
  • 168July, 2018
  • 120May, 2019
  • 108July, 2019
  • 88November, 2018
  • 81December, 2017
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 64March, 2020
  • 61November, 2019
  • 59September, 2020
  • 49April, 2018
  • 47September, 2023
  • 40May, 2024
  • 35December, 2018
  • 30January, 2019
  • 26February, 2018
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 11September, 2017
  • 10December, 2019
  • 7August, 2020
  • 7January, 2018
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
  • 1July, 2025
Available data
  • 115tsv
  • 106bed narrowPeak
  • 64xls
  • 57txt
  • 41bam
  • 39bigWig
  • 24tagAlign
  • 5bed bed3+
  • 2bedpe bed3+
  • 2hic
  • 1vcf
Organism
  • 310Homo sapiens
Biosample type
  • 229tissue
  • 42in vitro differentiated cells
  • 36cell line
  • 4primary cell
Organ
  • 130kidney
  • 92heart
  • 35liver
  • embryo
  • 6blood vessel
  • 6epithelium
  • 6vasculature
  • 5connective tissue
  • 4pancreas
  • 2artery
  • 1adipose tissue
Project
  • 311AMP
Genome assembly (visualization)
  • 97GRCh38
  • 52hg19
Lab
  • 143AMP-T2D consortium
  • 128Katalin Susztak, Upenn
  • 36Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 3inconsistent ontology term
organ_slims!
  • embryo
BIOSAMPLE
ASSAY

311 results

search-icontable-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney8644961
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
in vitro differentiated cells
neural progenitor cell10721
adipocyte11
osteoblast11
cell line
HepG2918211
EndoC_BH12
HEK293T2
Synthesized DNA1
primary cell
hepatocyte4
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego