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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
total RNA-seq
7
ChIP-seq
2
STARR-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
9
Transcription
7
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
194
May, 2020
74
November, 2017
50
August, 2017
40
May, 2022
20
August, 2021
17
December, 2017
8
July, 2019
6
October, 2019
5
January, 2019
4
November, 2018
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
1
June, 2019
Available data
9
tsv
3
bed narrowPeak
3
bigWig
1
bedpe bed3+
1
hic
1
vcf
Organism
20
Homo sapiens
Biosample type
20
cell line
Organ
130
kidney
92
heart
24
liver
8
embryo
6
blood vessel
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
20
AMP
Genome assembly (visualization)
4
hg19
Lab
20
Bing Ren, UCSD
organ_slims!
epithelium
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
20 results
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total RNA-seq
ChIP-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
9
7
2
1
1
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