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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 76ATAC-seq
  • 43ChIP-seq
  • 6snATAC-seq
  • 4Capture-C
  • 3Hi-C
  • 1RNA microarray
  • 1whole genome sequencing assay
Assay category
  • 82DNA accessibility
  • 43DNA binding
  • 33D chromatin structure
  • 1DNA sequencing
Target of assay
  • 20histone
  • 20histone modification
  • 12control
  • 11narrow histone mark
  • 11transcription factor
  • 9broad histone mark
  • 1RNA binding protein
Date released
  • 406November, 2017
  • 322August, 2017
  • 288October, 2019
  • 218June, 2019
  • 217May, 2021
  • 196May, 2020
  • 140May, 2022
  • 134August, 2021
  • 120May, 2019
  • 111February, 2023
  • 94December, 2017
  • 87November, 2018
  • 80April, 2019
  • 74October, 2018
  • 66February, 2021
  • 59July, 2019
  • 49March, 2020
  • 46September, 2018
  • 41November, 2019
  • 40May, 2024
  • 35December, 2018
  • 30January, 2019
  • 24February, 2018
  • 23October, 2017
  • 16January, 2021
  • 11May, 2023
  • 11September, 2017
  • 10April, 2020
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 4October, 2022
  • 3September, 2020
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
Available data
  • 106bed narrowPeak
  • 64xls
  • 34bam
  • 32bigWig
  • 24tagAlign
  • 5bed bed3+
  • 2bedpe bed3+
  • 2hic
  • 1vcf
Organism
  • 133Homo sapiens
Biosample type
  • 73tissue
  • 35in vitro differentiated cells
  • 22cell line
  • 4primary cell
Organ
  • 71kidney
  • 24liver
  • 6epithelium
  • 5connective tissue
  • 3pancreas
  • 1adipose tissue
Project
  • 134AMP
Genome assembly (visualization)
  • 90GRCh38
  • 45hg19
Lab
  • 71Katalin Susztak, Upenn
  • 38AMP-T2D consortium
  • 21Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 2inconsistent ontology term
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

134 results

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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney6461
islet of Langerhans1
subcutaneous adipose tissue1
in vitro differentiated cells
neural progenitor cell1021
adipocyte11
osteoblast11
cell line
HepG21811
EndoC_BH12
primary cell
hepatocyte4
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