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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
66
total RNA-seq
41
ChIP-seq
4
Capture-C
3
Hi-C
2
snATAC-seq
1
RNA microarray
1
STARR-seq
1
whole genome sequencing assay
Assay category
172
Transcription
78
DNA accessibility
41
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
9
broad histone mark
9
transcription factor
1
RNA binding protein
Date released
683
February, 2021
388
August, 2017
385
May, 2021
301
August, 2021
285
May, 2020
240
October, 2019
200
May, 2022
199
February, 2023
186
June, 2019
167
July, 2018
111
November, 2017
106
May, 2019
84
July, 2019
79
April, 2019
73
September, 2018
69
October, 2018
59
September, 2020
49
April, 2018
48
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
38
November, 2019
35
December, 2017
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
13
January, 2021
11
September, 2017
10
November, 2020
9
January, 2019
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
December, 2019
3
June, 2018
1
August, 2022
Available data
115
tsv
104
bed narrowPeak
64
xls
57
txt
41
bam
37
bigWig
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
300
Homo sapiens
Biosample type
225
tissue
42
in vitro differentiated cells
30
cell line
4
primary cell
Organ
124
kidney
92
heart
31
liver
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
301
AMP
Genome assembly (visualization)
97
GRCh38
50
hg19
Lab
143
AMP-T2D consortium
124
Katalin Susztak, Upenn
30
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
replication_type!
isogenic
BIOSAMPLE
ASSAY
301 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
Capture-C
Hi-C
snATAC-seq
RNA microarray
STARR-seq
whole genome sequencing assay
tissue
kidney
8
64
49
1
2
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
9
16
1
1
EndoC_BH1
2
Synthesized DNA
1
primary cell
hepatocyte
4
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