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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 27ChIP-seq
  • 16total RNA-seq
  • 12ATAC-seq
  • 4STARR-seq
  • 4snATAC-seq
  • 2Capture-C
  • 1Hi-C
Assay category
  • 27DNA binding
  • 16DNA accessibility
  • 16Transcription
  • 13D chromatin structure
Target of assay
  • 17histone
  • 17histone modification
  • 9narrow histone mark
  • 8broad histone mark
  • 8control
  • 2transcription factor
Date released
  • 295November, 2017
  • 148May, 2021
  • 144May, 2020
  • 124October, 2019
  • 66August, 2021
  • 64November, 2018
  • 62December, 2017
  • 62June, 2019
  • 60July, 2019
  • 56August, 2017
  • 53February, 2023
  • 48March, 2020
  • 45July, 2018
  • 43February, 2021
  • 39April, 2018
  • 28December, 2018
  • 25February, 2020
  • 24November, 2019
  • 21January, 2019
  • 14May, 2019
  • 10November, 2020
  • 8October, 2018
  • 7December, 2019
  • 7October, 2017
  • 5January, 2021
  • 5March, 2019
  • 3August, 2018
  • 3October, 2022
  • 2April, 2019
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 49bam
  • 35bigWig
  • 30bed narrowPeak
  • 24tagAlign
  • 16tsv
  • 5bed bed3+
  • 1bedpe bed3+
Organism
  • 66Homo sapiens
Biosample type
  • 42in vitro differentiated cells
  • 14cell line
  • 6tissue
  • 4primary cell
Organ
  • 8embryo
  • 8liver
  • 6kidney
  • 4connective tissue
  • 4epithelium
  • 2pancreas
Project
  • 66AMP
Genome assembly (visualization)
  • 46hg19
  • 41GRCh38
Lab
  • 50AMP-T2D consortium
  • 8Bing Ren, UCSD
  • 4Katalin Susztak, Upenn
  • 4Struan F.A. Grant, CHOP
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

66 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
snATAC-seq
Capture-C
Hi-C
in vitro differentiated cells
neural progenitor cell21710
adipocyte11
osteoblast11
cell line
H1-hESC8
HepG222
HEK293T2
tissue
kidney4
islet of Langerhans11
primary cell
hepatocyte4
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