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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
64
ATAC-seq
58
total RNA-seq
16
ChIP-seq
2
Capture-C
2
Hi-C
2
snATAC-seq
1
RNA microarray
1
STARR-seq
1
whole genome sequencing assay
Assay category
164
Transcription
66
DNA accessibility
16
DNA binding
2
3D chromatin structure
1
DNA sequencing
Target of assay
9
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
672
February, 2021
355
August, 2017
253
August, 2021
251
May, 2021
198
May, 2022
197
May, 2020
190
October, 2019
156
June, 2019
152
February, 2023
123
July, 2018
111
November, 2017
106
May, 2019
78
April, 2019
72
September, 2018
68
October, 2018
59
September, 2020
48
July, 2019
47
September, 2023
40
May, 2024
38
February, 2018
37
November, 2019
32
December, 2017
24
November, 2018
19
April, 2020
16
March, 2020
16
October, 2017
15
May, 2023
11
January, 2021
10
April, 2018
9
January, 2019
9
September, 2017
8
January, 2018
7
August, 2020
7
December, 2018
6
November, 2020
4
March, 2023
3
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
107
tsv
76
bed narrowPeak
64
xls
57
txt
12
bigWig
2
hic
1
bedpe bed3+
1
vcf
Organism
252
Homo sapiens
Biosample type
223
tissue
30
cell line
Organ
124
kidney
92
heart
27
liver
6
blood vessel
6
vasculature
2
artery
2
epithelium
2
pancreas
1
adipose tissue
1
connective tissue
Project
253
AMP
Genome assembly (visualization)
64
GRCh38
14
hg19
Lab
124
Katalin Susztak, Upenn
101
AMP-T2D consortium
28
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
BIOSAMPLE
ASSAY
253 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
Capture-C
Hi-C
snATAC-seq
RNA microarray
STARR-seq
whole genome sequencing assay
tissue
kidney
8
64
49
1
2
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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cell line
HepG2
9
16
1
1
EndoC_BH1
2
Synthesized DNA
1
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