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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 106single cell RNA-seq
  • 64ATAC-seq
  • 58total RNA-seq
  • 16ChIP-seq
  • 2Capture-C
  • 2Hi-C
  • 2snATAC-seq
  • 1RNA microarray
  • 1STARR-seq
  • 1whole genome sequencing assay
Assay category
  • 164Transcription
  • 66DNA accessibility
  • 16DNA binding
  • 23D chromatin structure
  • 1DNA sequencing
Target of assay
  • 9transcription factor
  • 4control
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 1RNA binding protein
  • 1broad histone mark
Date released
  • 672February, 2021
  • 355August, 2017
  • 253August, 2021
  • 251May, 2021
  • 198May, 2022
  • 197May, 2020
  • 190October, 2019
  • 156June, 2019
  • 152February, 2023
  • 123July, 2018
  • 111November, 2017
  • 106May, 2019
  • 78April, 2019
  • 72September, 2018
  • 68October, 2018
  • 59September, 2020
  • 48July, 2019
  • 47September, 2023
  • 40May, 2024
  • 38February, 2018
  • 37November, 2019
  • 32December, 2017
  • 24November, 2018
  • 19April, 2020
  • 16March, 2020
  • 16October, 2017
  • 15May, 2023
  • 11January, 2021
  • 10April, 2018
  • 9January, 2019
  • 9September, 2017
  • 8January, 2018
  • 7August, 2020
  • 7December, 2018
  • 6November, 2020
  • 4March, 2023
  • 3December, 2019
  • 2June, 2018
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 107tsv
  • 76bed narrowPeak
  • 64xls
  • 57txt
  • 12bigWig
  • 2hic
  • 1bedpe bed3+
  • 1vcf
Organism
  • 252Homo sapiens
Biosample type
  • 223tissue
  • 30cell line
Organ
  • 124kidney
  • 92heart
  • 27liver
  • 6blood vessel
  • 6vasculature
  • 2artery
  • 2epithelium
  • 2pancreas
  • 1adipose tissue
  • 1connective tissue
Project
  • 253AMP
Genome assembly (visualization)
  • 64GRCh38
  • 14hg19
Lab
  • 124Katalin Susztak, Upenn
  • 101AMP-T2D consortium
  • 28Bing Ren, UCSD
Audit category:
  • 3inconsistent ontology term
BIOSAMPLE
ASSAY

253 results

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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
Capture-C
Hi-C
snATAC-seq
RNA microarray
STARR-seq
whole genome sequencing assay
tissue
kidney8644912
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
cell line
HepG291611
EndoC_BH12
Synthesized DNA1
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